Dr Oscar Verho – Optimising Carbon-hydrogen Bond Activation for Efficient Organic Synthesis

Jan 27, 2021 | Physical Science

Choosing which drug molecule to build is only one part of pharmaceutical research; medicinal chemists also need to know how to synthesise drug molecules in an efficient and cost-effective manner. Dr Oscar Verho and his team at Uppsala University in Sweden have made significant progress in this area and are aiming to reduce the time and resources needed to make drug compounds. The team is researching methods to ‘activate’ the carbon-hydrogen bonds that are commonly found in organic molecules to ultimately shorten the synthetic route to the required compound.

Building Drug Compounds in Fewer Steps

The synthesis of drug compounds almost always involves multiple steps, and therefore requires a lot of thought. The synthetic procedures for these chemicals must be economically viable and result in minimal chemical waste.

Each intermediate step of a synthetic pathway involves the incorporation of atoms at a specific site of the molecule. This iterative process continues until the final product is built. At the end of each step, the reaction mixture is usually purified, requiring solvents and other chemicals, before being analysed to confirm its structure and purity. Overall, the synthetic process can be long and complex.

Nearly all organic compounds contain both carbon and hydrogen atoms, often bound to one another in carbon-hydrogen bonds. In many synthetic methods, chemists prefer to directly swap a hydrogen atom in an organic compound for another atom or group of atoms. Unfortunately, this is not easy to achieve because carbon-hydrogen bonds are quite unreactive, and so are difficult to break. Furthermore, many molecules are made up of several carbon-hydrogen bonds, which means that a synthetic procedure must also be selective for a specific carbon-hydrogen bond.

For the past two decades or so, chemists have developed efficient methods that exchange hydrogen for the desired atom or group of atoms in a few steps. Dr Oscar Verho and his team from Uppsala University in Sweden are part of a community of chemists who develop methods that aim to substitute hydrogen atoms more directly from carbon-hydrogen bonds.

Carbon-hydrogen bonds, hereinafter referred to as ‘C-H bonds’, are difficult to break. Dr Verho’s research attempts to resolve the unreactive nature of the C-H bond by temporarily changing the chemical structure of the molecule by introducing a chemical group near the bond.

‘Introducing this so-called “directing group” works as a guide for a catalyst, pointing it to a specific C-H bond,’ explains Dr Verho. The catalyst can then break the C-H bond, in a step known as ‘activation’, allowing the chemist to replace the hydrogen atom with another atom or group. ‘However, as the directing group itself has no value in the product, it often must be removed afterwards, which constitutes another important chemical step for which new synthetic methods are needed,’ Dr Verho adds.

Detaching the Directing Group

Central to Dr Verho’s work presented here is an organic compound known as ‘8-aminoquinoline’, abbreviated as AQ, which is composed of a ring-like structure of carbon, hydrogen and nitrogen atoms. The team’s plan is to incorporate AQ as a directing group, use it to mediate the substitution of the hydrogen atom of the C-H bond, and then remove it.

It is already known that AQ can facilitate the activation of C-H bonds and greatly simplify the processes through which organic compounds are built, particularly drug molecules. Techniques to remove the AQ group from the molecule, once the hydrogen atom has been replaced, have also been developed, but these methods are often harsh and can sometimes lead to the precious molecules breaking down. Before developing new AQ-based methods for the C-H bond activation of unexplored drug-like compounds, Dr Verho and his group first looked at the latter stages of the overall pathway, that is, the removal of AQ.

An arrangement of bonded atoms known as the ‘amide’ group is commonly found in many drug molecules. Both amide and AQ groups contain nitrogen. As such, AQ can connect to the amide group through its nitrogen atom. Substituting the nitrogen-containing AQ group with a different nitrogen-containing group (for example, an amine compound) breaks the link between AQ and the amide, freeing AQ from the molecule and forming a new amide bond with the incoming nitrogen-containing group. Gratifyingly, Dr Verho’s team showed how AQ could be substituted and removed under mild reaction conditions to form many new types of amide compounds that are useful in medicinal chemistry.

Overall, the team’s work produced some very encouraging results, demonstrating that AQ can be removed from a wide range of compounds that had been subjected to C-H activation.

AQ as a Viable Director

Dr Verho’s research team continued their pursuit of simpler and more efficient synthetic methods by using AQ to assist in the activation of the C-H bonds in compounds derived from a class of chemicals known as ‘terpenes’. Terpenes are readily-available and inexpensive organic compounds derived from turpentine which can be sourced from wood pulping processes. To chemists, terpenes are considered a natural source of ready-made, structurally diverse organic compounds that contain atoms arranged in interesting ring shapes. Terpenes are useful in the pharmaceutical industry, and in the production of fragrances and polymers, among other compounds.

Using a terpene named verbenone, the Verho group could produce a molecule containing a ring of four carbon atoms, called ‘cyclobutane’. Each carbon atom in a cyclobutane ring is usually bonded to at least one hydrogen atom. However, many sought-after compounds are composed of a cyclobutane ring bonded not to hydrogen, but to other atoms. Synthesising such compounds is unfortunately quite challenging, as it requires complex reactions involving C-H activation to be carried out. Dr Verho’s team was particularly interested in the potential for AQ to help in the activation of the C-H bonds of cyclobutane, enabling them to substitute the hydrogen atoms for other groups under mild conditions.

Dr Verho and his group started with the major components of turpentine and followed a five-step process to produce a compound containing both a cyclobutane ring and an AQ group. With this compound in hand, the team attempted to substitute a hydrogen atom bonded to the cyclobutane ring with other ring-containing organic groups. Much to their delight, the researchers found that they could activate a specific C-H bond in cyclobutane using a palladium catalyst with the aid of AQ, allowing for a range of ring-containing groups to be introduced in the place of the hydrogen atom.

The products obtained by the team also exhibited another noteworthy property – that of ‘stereoselectivity’. If two or more products have the same number and types of atoms and bonds, but these atoms and bonds are arranged in different ways, then the molecules are distinct, and can have different properties. These different variations of a molecule are known as ‘stereoisomers’.

What is impressive about Dr Verho’s findings is that their synthetic method resulted in the production of one specific stereoisomer. The preferential production of one stereoisomer over the other is commonplace in nature, but is quite difficult to control in the laboratory. Indeed, there are lots of examples of pharmaceuticals where only one stereoisomer will lead to a required medicinal response.

‘In this project, we made use of ozone to activate the AQ so it could be removed under mild conditions using dimethylsulfide and ammonium hydroxide,’ says Dr Verho. In this way, his team was also able remove AQ in a series of steps at temperatures no higher than room temperature, converting and recovering 65% of the maximum possible amount of product.

One-pot Reactions

Another commonly occurring organic structure found in pharmaceuticals is ‘benzofuran’, a ring structure of carbon, hydrogen and a single oxygen atom. Following the success of their work with AQ-assisted activation of C-H bonds in cyclobutane, Dr Verho and his team investigated the application of AQ towards C-H bond activation in benzofurans.

Dr Verho’s team proceeded to bond AQ to a benzofuran-containing compound through an amide group. The newly incorporated AQ group can guide a palladium catalyst to activate the C-H bonds of benzofuran for subsequent hydrogen substitution. ‘Similar reactions to introduce ring-containing groups like in the case of cyclobutane could be done for benzofuran as well,’ says Dr Verho. ‘This showcases the generality and power of the 8-AQ C-H activation approach, as it can be carried out in high efficiency on many, vastly different organic compounds.’ The amide link between the benzofuran and the AQ also provided the team with an easy way to remove the AQ.

The removal of AQ and the formation of the final AQ-free product requires two stages. Instead of carrying out each stage independently, Dr Verho’s team performed both stages in the same reaction vessel, as a so-called ‘one-pot’ procedure. Essentially, the starting compounds for the first stage are mixed together, and after a certain time has passed, those for the second stage are added. The team found that the one-pot process could be completed in less than 11 hours and resulted is yields of over 60% after both stages. This approach saves time and minimises waste.

Dr Verho and his team have made considerable advances concerning the activation of C-H bonds, and developed strategies where the directing group, AQ, can be readily attached and detached when required. Their one-pot synthesis also makes AQ removal simpler to execute, and provides access to a range of interesting amide compounds. Evidently, their work will benefit all sorts of chemical industries, particularly pharmaceuticals, allowing for the efficient production of drug intermediates.

Reference
https://doi.org/10.33548/SCIENTIA617

Meet the researcher


Dr Oscar Verho

Department of Medicinal Chemistry
Uppsala University
Uppsala
Sweden

Dr Oscar Verho earned his PhD in Organic Chemistry from Stockholm University in Sweden. Following this, he worked as a Researcher at the same university and then moved to the Broad Institute of MIT and Harvard in the US to take a position as a Postdoctoral Research Fellow. He then returned to Stockholm University for three years, before moving to Uppsala University, where he currently works in the Department of Medicinal Chemistry. Dr Verho’s research group focuses on the development of novel synthetic methodologies that can be used for the preparation of biologically active compounds and structurally diverse compounds. Throughout his career, Dr Verho has presented his work in numerous countries around the world, including the US, Australia, Japan and across Europe.

CONTACT

E:  oscar.verho@ilk.uu.se

W: https://www.verholabs.com/group-leader

KEY COLLABORATORS

Prof. Jan-Erling Bäckvall, Department of Organic Chemistry, Stockholm University

Prof. Björn Åkermark, Department of Organic Chemistry, Stockholm University

Prof. Anders Karlén, Department of Medicinal Chemistry, Uppsala University

Prof. Markus Kärkäs, Department of Chemistry, Royal Institute of Technology, Stockholm

FUNDING

Wenner-Gren Foundations Fellow Program

Olle Engkvist Foundation

Magnus Bergvall Foundation

Futura Foundation

FURTHER READING

O Verho, MP Lati, M Oschmann, A Two-Step Procedure for the Overall Transamidation of 8-Aminoquinoline Amides Proceeding via the Intermediate N-Acyl-Boc-Carbamates, The Journal of Organic Chemistry, 2018, 83, 4464.

AJ Schmitz, A Ricke, M Oschmann, O Verho, Convenient Access to Chiral Cyclobutanes with Three Contiguous Stereocenters from Verbenone by Directed C(sp3)-H arylation, Chemistry A European Journal, 2019, 25, 5154.

M Oschmann, LJ Holm, M Pourghasemi-Lati, O Verho, Synthesis of Elaborate Benzofuran-2-Carboxamide Derivatives through a Combination of 8-Aminoquinoline Directed C–H Arylation and Transamidation Chemistry, Molecules, 2020, 25, 361.

Want to republish our articles?

 

We encourage all formats of sharing and republishing of our articles. Whether you want to host on your website, publication or blog, we welcome this. Find out more

Creative Commons Licence
(CC BY 4.0)

This work is licensed under a Creative Commons Attribution 4.0 International License. Creative Commons License

What does this mean?

Share: You can copy and redistribute the material in any medium or format

Adapt: You can change, and build upon the material for any purpose, even commercially.

Credit: You must give appropriate credit, provide a link to the license, and indicate if changes were made.

Subscribe now!


More articles you may like

Dr Xiaochuan Ma – Exploring the Evolution of Seafloor Sand Dunes

Dr Xiaochuan Ma – Exploring the Evolution of Seafloor Sand Dunes

Marine sand is both a vital natural habitat and an essential resource. However, while desert dunes are comparatively easy to observe, their oceanic counterparts are still poorly understood. Dr Xiaochuan Ma and his colleagues at the Chinese Academy of Sciences in Qingdao are mapping the shifting sands of the seafloor and measuring their movement. By investigating how seafloor dunes respond to waves, tides, and typhoons, they can help decision-makers protect and manage this critical resource.

Protecting Palau’s Food Security and Marine Ecology Using Satellite Technology

Protecting Palau’s Food Security and Marine Ecology Using Satellite Technology

Palau, a remote group of islands in the Pacific Ocean, relies heavily on wild fish to feed its citizens and support its economy. With a growing population and thriving tourism industry, the country cannot afford a crash in catch size. However, climate change is altering the ecosystems of Palau’s fishing waters, threatening harvests of important fish species. To improve the country’s food security and accelerate the achievement of the UN’s Sustainable Development Goals, the Palauan Government has teamed up with the Nature Conservancy to build a sustainable aquaculture community on the islands, with support from NASA. Using NASA satellite observations, the collaboration helps aquaculture farmers to find optimum locations to farm fish and shellfish, allowing them to produce an abundance of seafood while protecting the surrounding marine environment.

Dr Arpita Bose – Harnessing Microbes to Produce Sustainable Plastics and Biofuels

Dr Arpita Bose – Harnessing Microbes to Produce Sustainable Plastics and Biofuels

Before oxygen was widely available in Earth’s atmosphere, ancient microbes looked to other elements to obtain electrons for photosynthesis. Some of these microbes are called ‘photoferroautotrophs’ – which can take up electrons from iron available in their surrounding environment and use them to transform carbon dioxide (CO2) into biomolecules. In their research, Dr Arpita Bose and her team at Washington University in St Louis, explore the mechanisms these microbes exploit to produce biomolecules, using the electrons they take in. Their discoveries are leading to sustainable new ways to produce both plastic and fuel – and could soon prove to reduce our reliance on the compounds derived from crude oil.

Dr Jianmei Lu | Dr Quan Li – Shedding New Light on Smart Organic Materials

Dr Jianmei Lu | Dr Quan Li – Shedding New Light on Smart Organic Materials

Organic materials that can emit light in response to certain stimuli hold great promise for numerous real-world applications. So far, however, their diminished performance on exposure to water has presented numerous challenges. In their research, Dr Jianmei Lu at Soochow University and Dr Quan Li at Southeast University present a new series of compounds that instead display improved light emission when they are transformed into ‘hydrated’ crystals. By assessing the mechanisms responsible for this unique behaviour, the researchers now present new routes towards the widespread use of smart organic materials.